Postgraduate study in Bioorganic Chemistry serves for the education of chemical experts with an emphasis on the structure and functions of small organic molecules in living organisms and on the possibility of influencing biological processes in these organisms through the action of such molecules. The program is thus directed towards the study of all aspects of organic compounds, which are indispensable for the structure and functioning of living organisms. The broad spectrum of these compounds includes molecules with a building (primary metabolites) function, signaling function, activating or deactivating function in relationship to strategic proteins within the living organisms, and also compounds, which are produced by these organisms (natural products, secondary metabolites, metabolites of xenobiotics). The study is founded on the structure and synthesis of organic compounds with a focus on natural products, heterocycles, and other organic compounds, which are capable of modulating biological processes. Elucidation of the function of such compounds as parts of biological structures as well as that of their influence on biological processes and the possibility to modify this influence through structural changes are no less important. Bioorganic Chemistry thus serves as a link between Organic Chemistry and biomedical disciplines and partially overlaps with Pharmaceutical and Medicinal Chemistry. Bioorganic Chemistry is, however, more general than the latter two programs, which are primarily focused on the study and development of drugs, ie. a more limited subgroup of biologically active compounds.

The PhD study of the field Africa Studies or Latin American Studies aims at the preparation of qualified specialists in area studies with a primary focus on those two regions.

Doctoral Study on Chemistry Didactics is the culmination of the three-tier university education. Is a targeted grounding in research activities focused on teaching and learning chemistry, which is based on deepening the knowledge of the chemistry didactics and of the relevant area of chemistry, pedagogy, psychology, computer science and other disciplines, to learn the methods of scientific work in the mentioned fields and will significantly contribute to a comprehensive improvement of the work of chemistry teachers at various levels of the education system, experts on curriculum creation and its evaluation in accordance with current scientific knowledge and research.

The Philosophical Faculty of the University of Hradec Králové offers a Ph.D. Degree which may be pursued in full-time study. The Ph.D. programme is designed for students who have obtained a Master´s Degree in Philosophy and related study disciplines.